International Open Access Week is an annual scholarly communication event that is marked globally during the last full week of October to raise awareness about open access publishing of research and scholarly outputs to enable their universal online accessibility. The theme of Open Access Week 2021 (25 to 31 Oct) is ‘It matters how we open knowledge: Building structural equity’.

In the field of academic and research publishing, the peer-reviewed journal article is considered as the ‘gold standard’ for quality research outputs. However, many researchers nowadays also consider preprints as important and highly relevant outputs that contribute to the body of knowledge and enable discoverability of current research developments.

A preprint is a version of a scholarly or research manuscript that precedes formal peer review, typesetting and publication in a scholarly or scientific journal. Preprints are often uploaded to online preprint servers or institutional repositories where they are freely accessible as non-typeset versions of the manuscripts.

Publishing of preprints allows researchers to quickly share new findings with their peers and receive early feedback and comments which can help in revising manuscripts for submission to a scholarly journal.

At the International Livestock Research Institute (ILRI), scientists from the Animal and Human Health program carry out collaborative research to effectively manage or eliminate livestock, zoonotic and foodborne diseases that matter to the poor through the generation and use of knowledge, technologies and products, leading to higher farmer incomes and better health and nutrition for consumers and livestock.

While most of their research outputs are published as peer-reviewed journal articles, the program scientists also publish their findings in other formats including books, book chapters, conference proceedings, infographics, presentations, posters, reports, theses and videos. These outputs are all indexed in CGSpace, an open access institutional repository of agricultural research outputs.

The scientists are also increasingly making use of preprints to share their research via open access. In line with the theme of Open Access Week, we present below a curated list of preprints by scientists from ILRI’s Animal and Human Health program and research partners, to highlight the contribution of these outputs to open knowledge and open science.

  • Ejigu, B.A., Asfaw, M.D., Cavalerie, L., Abebaw, T., Nanyingi, M. and Baylis, M. Assessing the impact of non-pharmaceutical interventions (NPI) on the dynamics of COVID-19: A mathematical modelling study in the case of Ethiopia. medRxiv preprint. https://doi.org/10.1101/2020.11.16.20231746
  • Kibugu, J.K., Mburu, D., Munga, L.K., Kurgat, R., Mukasa, B., Lusweti, F.N., Grace, D. and Lindahl, J. Food-borne mycotoxin hazards in the Kenyan market: A retrospective study. bioRxiv preprint. https://doi.org/10.1101/773747
  • Muloi, D., Wee, B., McClean, D., Ward, M., Pankhurst, L., Phan, H., Ivens, A., Kivali, V., Kiyonga, A., Ndinda, C., Gitahi, N., Ouko, T., Hassell, J., Imboma, T., Akoko, J., Karani, M., Njoroge, S., Muinde, P., Nakamura, Y., Alumasa, L., Öhgren, E., Amanya, F., Ogendo, A., Wilson, D., Bettridge, J., Kiiru, J., Kyobutungi, C., Tacoli, C., Kang’ethe, E., Davila, J., Kariuki, S., Robinson, T., Rushton, J., Woolhouse, M. and Fèvre, E.M. Landscape genomics of Escherichia coli in livestock-keeping households across a rapidly developing urban city. InReview preprint. https://doi.org/10.21203/rs.3.rs-172737/v1
  • Mutembei, A., Mutai, F.K., Mwololo, D., Muriuki, J., Obonyo, M., Kairu-Wanyoike, S.W., Wainaina, M., Lindahl, J., Ontiri, E., Bukachi, S., Njeru, I., Karanja, J., Sang, R., Grace, D. and Bett, B. Leptospira spp. seroprevalence in humans involved in a cross-sectional study in Garissa and Tana River Counties, Kenya. bioRxiv preprint. https://doi.org/10.1101/2020.07.17.208363
  • Njaramba, J.K., Wambua, L., Mukiama, T., Amugune, N.O. and Villinger, J. Species substitution in the meat value chain by high-resolution melt analysis of mitochondrial PCR products. bioRxiv preprint. https://doi.org/10.1101/2021.01.12.426171
  • Njeru, J., Nthiwa, D., Akoko, J., Oyas, H. and Bett, B. Incidence of Brucella spp. in various livestock species raised under the pastoral production system in Isiolo County, Kenya. bioRxiv preprint. https://doi.org/10.1101/2020.06.25.170753
  • Ogutu, H.J., Owiny, M., Bett, B. and Otieno, C. Contribution of livestock marketing chains and role played by stakeholders’ knowledge, attitude and practice in spreading cystic hydatidosis to Busia Town, Kenya, 2018. bioRxiv preprint. https://doi.org/10.1101/638502
  • Talenti, A., Powell, J., Hemmink, J.D., Cook, E.A.J., Wragg, D., Jayaraman, S., Paxton, E., Ezeasor, C., Obishakin, E.T., Agusi, E.R., Tijjani, A., Marshall, K., Fisch, A., Ferreira, B., Qasim, A., Chaudhry, U.N., Wiener, P., Toye, P., Morrison, L.J., Connelley, T. and Prendergast, J. A cattle graph genome incorporating global breed diversity. bioRxiv preprint. https://doi.org/10.1101/2021.06.23.449389 
  • Xie, S., Tao, D., Fu, Y., Xu, B., Tang, Y., Steinaa, L., Hemmink, J.D., Pan, W., Huang, X., Nie, X., Zhao, C., Ruan, J., Zhang, Y., Han, J., Fu, L., Ma, Y., Li, X., Liu, X. and Zhao, S. Rapid visual CRISPR assay: a naked-eye colorimetric detection method for nucleic acids based on CRISPR/Cas12a and convolutional neural network. bioRxiv preprint. https://doi.org/10.1101/2021.07.17.452802

Photo credit: International Open Access Week

Open Access Week 2020 banner. Open with purpose: Taking action to build structural equity and inclusion. October 19-25.

International Open Access Week is an opportunity to raise awareness about open access publishing of research outputs to enable their universal online accessibility. Research outputs are wide-ranging and include articles in peer-reviewed journals, books, book chapters, conference proceedings, infographics, presentations, posters, reports, theses and videos.

The theme of this year’s Open Access Week (19–25 October) is ‘Open with purpose: taking action to build structural equity and inclusion’.

The Animal and Human Health program of the International Livestock Research Institute (ILRI) seeks to effectively manage or eliminate livestock, zoonotic and foodborne diseases that matter to the poor through the generation and use of knowledge, technologies and products, leading to higher farmer incomes and better health and nutrition for consumers and livestock.

To celebrate Open Access Week 2020, we bring you a curated selection of recently published open access outputs authored and co-authored by scientists from ILRI’s Animal and Human Health program from across our research portfolio on antimicrobial resistance, food safety, One Health and zoonotic diseases.

Book chapters

  • Bett, B., Randolph, D. and McDermott, J. 2020. Africa’s growing risk of diseases that spread from animals to people. In: Swinnen, J. and McDermott, J. (eds), COVID-19 and global food security. Washington, D.C.: IFPRI. pp. 124–128. https://hdl.handle.net/10568/108990
  • Kang’ethe, E., Grace, D., Alonso, S., Lindahl, J., Mutua, F. and Haggblade, S. 2020. Food safety and public health implications of growing urban food markets. In: AGRA, Africa Agriculture Status Report. Feeding Africa’s cities: Opportunities, challenges, and policies for linking African farmers with growing urban food markets. Issue 8. Nairobi, Kenya: Alliance for a Green Revolution in Africa (AGRA): 101–119. https://hdl.handle.net/10568/109386

Peer-reviewed journal articles

  • Ferguson, A.W., Muloi, D., Ngatia, D.K., Kiongo, W., Kimuyu, D.M., Webala, P.W., Olum, M.O., Muturi, M., Thumbi, S.M., Woodroffe, R., Murugi, L., Fèvre, E.M., Murray, S. and Martins, D.J. 2020. Volunteer based approach to dog vaccination campaigns to eliminate human rabies: Lessons from Laikipia County, Kenya. PLOS Neglected Tropical Diseases 14(7): e0008260. https://hdl.handle.net/10568/108692
  • Hu Suk Lee, Vuong Nghia Bui, Huyen Xuan Nguyen, Anh Ngoc Bui, Trung Duc Hoang, Hung Nguyen-Viet, Randolph, D.G. and Wieland, B. 2020. Seroprevalences of multi-pathogen and description of farm movement in pigs in two provinces in Vietnam. BMC Veterinary Research 16: 15. https://hdl.handle.net/10568/106618 
  • Kemboi, D.C., Antonissen, G., Ochieng, P.E., Croubels, S., Okoth, S., Kang’ethe, E.K., Faas, J., Lindahl, J.F. and Gathumbi, J.K. 2020. A review of the impact of mycotoxins on dairy cattle health: Challenges for food safety and dairy production in sub-Saharan Africa. Toxins 12(4): 222. https://hdl.handle.net/10568/108030
  • Kivali, V., Kiyong’a, A.N., Fyfe, J., Toye, P., Fèvre, E.M. and Cook, E.A.J. 2020. Spatial distribution of trypanosomes in cattle from western Kenya. Frontiers in Veterinary Science 7: 554. https://hdl.handle.net/10568/109133
  • Kiyong’a, A.N., Cook, E.A.J., Okba, N.M.A., Kivali, V., Reuksen, C., Haagmans, B.L. and Fèvre, E.M. 2020. Middle East respiratory syndrome coronavirus (MERS-CoV) seropositive camel handlers in Kenya. Viruses 12(4): 396. https://hdl.handle.net/10568/107946
  • Long Pham-Thanh, Magnusson, U., Minh Can-Xuan, Hung Nguyen-Viet, Lundkvist, Å. and Lindahl, J. 2020. Livestock development in Hanoi city, Vietnam—Challenges and policies. Frontiers in Veterinary Science 7: 566. https://hdl.handle.net/10568/109404
  • Mitchell, M.E.V., Alders, R., Unger, F., Hung Nguyen-Viet, Trang Thi Huyen Le and Toribio, J.-A. 2020. The challenges of investigating antimicrobial resistance in Vietnam – what benefits does a One Health approach offer the animal and human health sectors? BMC Public Health 20: 213. https://hdl.handle.net/10568/107087 
  • Mutua, F., Sharma, G., Grace, D., Bandyopadhyay, S., Shome, B. and Lindahl, J. 2020. A review of animal health and drug use practices in India, and their possible link to antimicrobial resistance. Antimicrobial Resistance and Infection Control 9: 103. https://hdl.handle.net/10568/108734
  • Njenga, M.K., Ogolla, E., Thumbi, S.M., Ngere, I., Omulo, S., Muturi, M., Marwanga, D., Bitek, A., Bett, B., Widdowson, M.-A., Munyua, P. and Osoro, E.M. 2020. Comparison of knowledge, attitude, and practices of animal and human brucellosis between nomadic pastoralists and non-pastoralists in Kenya. BMC Public Health 20: 269. https://hdl.handle.net/10568/107419
  • Wernli, D., Jørgensen, P.S., Parmley, E.J., Troell, M., Majowicz, S., Harbarth, S., Léger, A., Lambraki, I., Graells, T., Henriksson, P.J.G., Carson, C., Cousins, M., Ståhlgren, G.S., Mohan, C.V., Simpson, A.J.H., Wieland, B., Pedersen, K., Schneider, A., Chandy, S.J., Wijayathilaka, T.P., Delamare-Deboutteville, J., Vila, J., Lundborg, C.S. and Pittet, D. 2020. Evidence for action: A One Health learning platform on interventions to tackle antimicrobial resistance. Lancet Infectious Diseases. https://hdl.handle.net/10568/109151

Infographic

  • Grace, D., Alonso, S., Mutua, F., Hoffmann, V., Lore, T. and Karugia, J. 2020. Food safety in Kenya: Focus on dairy. Infographic. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/109143

Presentations and posters

  • Diarra, S., Dione, M., Konkobo-Yameogo, C., Ilboudo, G., Roesel, K., Lallogo, V.R., Ouattara, L. and Knight-Jones, T. 2020. Value chain assessment of animal source foods and vegetables in Ouagadougou, Burkina Faso: Food safety, quality and hygiene perceptions and practices. Presentation at a project webinar, 20 May 2020. https://hdl.handle.net/10568/108633
  • Hung Nguyen-Viet, Unger, F., Hu Suk Lee, Lindahl, J., Thang Nguyen, Bett, B., Fèvre, E., Tum, S., Sinh Dang Xuan, Moodley, A. and Grace, D. 2020. One Health research at the International Livestock Research Institute to address neglected tropical diseases, zoonoses and emerging infectious diseases in Southeast Asia. Presentation at a webinar by the One Health Collaborating Center Universitas Gadjah Mada, ‘World Zoonoses Day 2020: Lessons learned and future directions’, 7 July 2020. https://hdl.handle.net/10568/108791
  • Lindahl, J., Mutua, F. and Grace, D. 2020. Livestock interventions in low-income countries: A theory of change for improved nutrition. Poster presentation at the virtual 2020 Agriculture, Nutrition and Health (ANH) Academy Week research conference, 30 June–2 July 2020. https://hdl.handle.net/10568/108715
  • Wieland, B., Moodley, A., Mbatidde, I., Ndoboli, D., Tenhagen, B.-A., Roesler, U., Erechu, R., Litta-Mulondo, A., Kakooza, S., Waiswa, J. and Kankya, C. 2020. Mitigating agriculture-associated antimicrobial resistance in poultry value chains in Uganda. Poster presented at the virtual annual planning meeting of the Boosting Uganda’s Investment in Livestock Development (BUILD) project, 10–12 June 2020. https://hdl.handle.net/10568/108689

Project report

  • Blackmore, E., Guarín, A., Alonso, S., Grace, D. and Vorley, B. 2020. Informal milk markets in Kenya, Tanzania and Assam (India): An overview of their status, policy context, and opportunities for policy innovation to improve health and safety. ILRI Research Report. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/109797

Research briefs

  • Lam, S., Huyen Thi Thu Nguyen, Hung Nguyen-Viet and Unger, F. 2020. Mapping pathways toward safer pork in Vietnam. ILRI Research Brief 95. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/108768
  • Nguyen Thi Thinh, Grace, D., Pham Van Hung, Le Thi Thanh Huyen, Hung Nguyen Viet, Sinh Dang-Xuan, Nguyen Thi Duong Nga, Nguyen Thanh Luong, Nguyen Thi Thu Huyen, Tran Thi Bich Ngoc, Pham Duc Phuc and Unger, F. 2020. Food safety performance in key pork value chains in Vietnam. ILRI Research Brief 94. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/108320
  • Pham Duc Phuc, Toribio, J.-A., Ngo Hoang Tuan Hai, Sinh Dang-Xuan, Nguyen Thanh Luong, Langley, S.J., Dunham, J.G., Dinh Thanh Thuy, Dang Vu Hoa, Hung Nguyen-Viet, Grace, D. and Unger, F. 2020. Food safety risk communication and training need of stakeholders and consumers regarding pork value chain in Vietnam. ILRI Research Brief 96. Nairobi, Kenya: ILRI. https://hdl.handle.net/10568/108769

Videos

Photo credit: International Open Access Week website

Open Access logo

Open Access Week is celebrated globally every year during the last complete week of October. To mark Open Access Week 2019, we highlight some recent open access research articles authored and co-authored by scientists from the Animal and Human Health program of the International Livestock Research Institute (ILRI). 

The program seeks to effectively manage or eliminate livestock, zoonotic and foodborne diseases that matter to the poor through the generation and use of knowledge, technologies and products, leading to higher farmer incomes and better health and nutrition for consumers and livestock.

Read about our research on antimicrobial resistance, food safety, One Health and zoonotic diseases from this selection of peer-reviewed, open access journal articles published this year:

For more information, contact Delia Randolph (d.randolph@cgiar.org) or Vish Nene (v.nene@cgiar.org), co-leaders of ILRI’s Animal and Human Health program.

Photo credit: International Open Access Week

Maarifa - Communications and Knowledge Management

Adequate nutrition, particularly in the first 1,000 days of life, is critical to both physical and mental development and long-term health. Poor access to agricultural and health information has been recognised as a major barrier in the uptake of improved nutritional practices, particularly for women and vulnerable groups in marginalised areas. Developed through the mNutrition Initiative, the Nutrition Knowledge Bank (going live on 25 October) aims to help bridge the gap between information providers and users by providing an open-access store of both nutrition-sensitive agricultural approaches and nutrition-specific health interventions.

Read the full news item

The GSMA mNutrition Initiative is a DFID-funded global project developing agriculture, health and nutrition messages to address knowledge gaps and promote behaviour change. The Global content partner consortium consists of BMJ, CABI, GAIN, ILRI and Oxfam. It partner with local organisations to produce localised content, which is then directly disseminated by service providers through mobile…

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